Record Information
Version1.0
Creation Date2016-09-30 22:35:41 UTC
Update Date2020-05-11 20:21:27 UTC
BMDB IDBMDB0000733
Secondary Accession Numbers
  • BMDB00733
Metabolite Identification
Common NameHyodeoxycholic acid
DescriptionHyodeoxycholic acid, also known as hyodeoxycholate or 6a-hydroxylithocholate, belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups. Hyodeoxycholic acid is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Thumb
Synonyms
ValueSource
HyodeoxycholateGenerator
3a,6a-Dihydroxy-5b-cholan-24-OateHMDB
3a,6a-Dihydroxy-5b-cholan-24-Oic acidHMDB
3a,6a-Dihydroxy-5b-cholanateHMDB
3a,6a-Dihydroxy-5b-cholanic acidHMDB
3a,6a-Dihydroxy-5b-cholanoateHMDB
3a,6a-Dihydroxy-5b-cholanoic acidHMDB
6a-HydroxylithocholateHMDB
6a-Hydroxylithocholic acidHMDB
7-DeoxyhyocholateHMDB
7-Deoxyhyocholic acidHMDB
a-HyodeoxycholateHMDB
a-Hyodeoxycholic acidHMDB
alpha-HyodeoxycholateHMDB
alpha-Hyodeoxycholic acidHMDB
HyodesoxycholateHMDB
Hyodesoxycholic acidHMDB
IodeoxycholateHMDB
Iodeoxycholic acidHMDB
3,6-Dihydroxy-5alpha-cholanoic acidHMDB
NaHDC compoundHMDB
Hyodeoxycholic acid, (3alpha,5beta,6beta)-isomerHMDB
Hyodeoxycholic acid, (3alpha,6beta)-isomerHMDB
Hyodeoxycholic acid, sodium saltHMDB
Murideoxycholic acidHMDB
Sodium hyodeoxycholateHMDB
(4R)-4-[(1S,2R,5R,8S,10S,11S,14R,15R)-5,8-Dihydroxy-2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl]pentanoateHMDB
Hyodeoxycholic acidMeSH
Chemical FormulaC24H40O4
Average Molecular Weight392.572
Monoisotopic Molecular Weight392.292659768
IUPAC Name(4R)-4-[(1S,2R,5R,8S,10S,11S,14R,15R)-5,8-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]pentanoic acid
Traditional Name(4R)-4-[(1S,2R,5R,8S,10S,11S,14R,15R)-5,8-dihydroxy-2,15-dimethyltetracyclo[8.7.0.0^{2,7}.0^{11,15}]heptadecan-14-yl]pentanoic acid
CAS Registry Number83-49-8
SMILES
[H][C@@]12CC[C@H]([C@H](C)CCC(O)=O)[C@@]1(C)CC[C@@]1([H])[C@@]2([H])C[C@H](O)C2C[C@H](O)CC[C@]12C
InChI Identifier
InChI=1S/C24H40O4/c1-14(4-7-22(27)28)17-5-6-18-16-13-21(26)20-12-15(25)8-10-24(20,3)19(16)9-11-23(17,18)2/h14-21,25-26H,4-13H2,1-3H3,(H,27,28)/t14-,15-,16+,17-,18+,19+,20?,21+,23-,24-/m1/s1
InChI KeyDGABKXLVXPYZII-CDONHWFASA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as dihydroxy bile acids, alcohols and derivatives. Dihydroxy bile acids, alcohols and derivatives are compounds containing or derived from a bile acid or alcohol, and which bears exactly two carboxylic acid groups.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassBile acids, alcohols and derivatives
Direct ParentDihydroxy bile acids, alcohols and derivatives
Alternative Parents
Substituents
  • Dihydroxy bile acid, alcohol, or derivatives
  • 3-hydroxysteroid
  • 3-alpha-hydroxysteroid
  • 6-hydroxysteroid
  • Hydroxysteroid
  • Cyclic alcohol
  • Secondary alcohol
  • Carboxylic acid
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organic oxide
  • Carbonyl group
  • Alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Cytoplasm
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting Point198.5 °CNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.0598 mg/mLNot Available
LogP3.08RODA,A ET AL. (1990)
Predicted Properties
PropertyValueSource
logP2.98ALOGPS
logP3.71ChemAxon
logS-4.4ALOGPS
pKa (Strongest Acidic)4.79ChemAxon
pKa (Strongest Basic)-2.7ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area77.76 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity109.27 m³·mol⁻¹ChemAxon
Polarizability46.69 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Biological Properties
Cellular Locations
  • Cell membrane
  • Cytoplasm
Biospecimen Locations
  • Gallbladder
  • Intestine
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
GallbladderExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
details
IntestineExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
details
KidneyExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
details
LiverExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
details
Abnormal Concentrations
Not Available
HMDB IDHMDB0000733
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB022211
KNApSAcK IDNot Available
Chemspider ID8139282
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkHyodeoxycholic acid
METLIN ID5701
PubChem Compound9963687
PDB IDNot Available
ChEBI IDNot Available
References
Synthesis ReferenceEyssen, H. J.; De Pauw, G.; Van Eldere, J. Formation of hyodeoxycholic acid from muricholic acid and hyocholic acid by an unidentified Gram-positive rod termed HDCA-1 isolated from rat intestinal microflora. Applied and Environmental Microbiology (1999),
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available