Showing metabocard for PC(P-16:0/20:3(5Z,8Z,11Z)) (BMDB0011218)

IdentificationTaxonomyPhysical propertiesPathwaysSpectraConcentrationsLinksReferencesXML
Record Information
Version1.0
Creation Date2016-10-03 18:14:41 UTC
Update Date2020-06-04 19:51:37 UTC
BMDB IDBMDB0011218
Secondary Accession Numbers
  • BMDB11218
Metabolite Identification
Common NamePC(P-16:0/20:3(5Z,8Z,11Z))
DescriptionPC(P-16:0/20:3(5Z,8Z,11Z)) is a phosphatidylchloline (PC). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylcholines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PC(P-16:0/20:3(5Z,8Z,11Z)), in particular, consists of one 1Z-hexadecenyl chain to the C-1 atom, and one 5Z,8Z,11Z-eicosatrienoyl to the C-2 atom. In E. coli, PCs can be found in the integral component of the cell outer membrane. They are hydrolyzed by Phospholipases to a 2-acylglycerophosphocholine and a carboxylate.
Structure
Thumb
MOLSDFPDBSMILESInChI
Synonyms
ValueSource
1-(1-Enyl-palmitoyl)-2-meadoyl-sn-glycero-3-phosphocholineHMDB
Gpcho(16:0/20:3)HMDB
Gpcho(16:0/20:3n9)HMDB
Gpcho(16:0/20:3W9)HMDB
Gpcho(36:3)HMDB
1-(1Z-Hexadecenyl)-2-meadoyl-GPCHMDB
1-(1Z-Hexadecenyl)-2-meadoyl-sn-glycero-3-phosphocholineHMDB
1-(1Z-Hexadecenyl)-2-meadoyl-sn-glycero-phosphatidylcholineHMDB
GPC(16:1/20:3)HMDB
GPC(36:4)HMDB
GPC(O-16:1(1Z)/20:3(5Z,8Z,11Z))HMDB
GPC(O-16:1(1Z)/20:3n9)HMDB
GPC(O-16:1(1Z)/20:3W9)HMDB
GPC(p-16:0/20:3(5Z,8Z,11Z))HMDB
GPC(p-16:0/20:3n9)HMDB
GPC(p-16:0/20:3W9)HMDB
GPCho(16:1/20:3)HMDB
GPCho(36:4)HMDB
GPCho(O-16:1(1Z)/20:3(5Z,8Z,11Z))HMDB
GPCho(O-16:1(1Z)/20:3n9)HMDB
GPCho(O-16:1(1Z)/20:3W9)HMDB
GPCho(p-16:0/20:3(5Z,8Z,11Z))HMDB
GPCho(p-16:0/20:3n9)HMDB
GPCho(p-16:0/20:3W9)HMDB
PC(16:1/20:3)HMDB
PC(36:4)HMDB
PC(O-16:1(1Z)/20:3(5Z,8Z,11Z))HMDB
PC(O-16:1(1Z)/20:3n9)HMDB
PC(O-16:1(1Z)/20:3W9)HMDB
PC(p-16:0/20:3n9)HMDB
PC(p-16:0/20:3W9)HMDB
Phosphatidylcholine(16:1/20:3)HMDB
Phosphatidylcholine(36:4)HMDB
Phosphatidylcholine(O-16:1(1Z)/20:3(5Z,8Z,11Z))HMDB
Phosphatidylcholine(O-16:1(1Z)/20:3n9)HMDB
Phosphatidylcholine(O-16:1(1Z)/20:3W9)HMDB
Phosphatidylcholine(p-16:0/20:3(5Z,8Z,11Z))HMDB
Phosphatidylcholine(p-16:0/20:3n9)HMDB
Phosphatidylcholine(p-16:0/20:3W9)HMDB
Chemical FormulaC44H82NO7P
Average Molecular Weight768.0981
Monoisotopic Molecular Weight767.582890495
IUPAC Name[2-({3-[(1Z)-hexadec-1-en-1-yloxy]-2-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]propyl phosphonato}oxy)ethyl]trimethylazanium
Traditional Name[2-({3-[(1Z)-hexadec-1-en-1-yloxy]-2-[(5Z,8Z,11Z)-icosa-5,8,11-trienoyloxy]propyl phosphonato}oxy)ethyl]trimethylazanium
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCC\C=C/OCC(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCC\C=C/C\C=C/C\C=C/CCCCCCCC
InChI Identifier
InChI=1S/C44H82NO7P/c1-6-8-10-12-14-16-18-20-22-23-24-25-27-29-31-33-35-37-44(46)52-43(42-51-53(47,48)50-40-38-45(3,4)5)41-49-39-36-34-32-30-28-26-21-19-17-15-13-11-9-7-2/h20,22,24-25,29,31,36,39,43H,6-19,21,23,26-28,30,32-35,37-38,40-42H2,1-5H3/b22-20-,25-24-,31-29-,39-36-
InChI KeyXWYIIYJIVUGRQE-YDGSBDHOSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as 1-(1z-alkenyl),2-acyl-glycerophosphocholines. These are glycerophosphocholines that carry exactly one acyl chain attached to the glycerol moiety through an ester linkage at the O2-position, and one 1Z-alkenyl chain attached through an ether linkage at the O1-position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct Parent1-(1Z-alkenyl),2-acyl-glycerophosphocholines
Alternative Parents
Substituents
  • 1-(1z-alkenyl),2-acyl-glycerophosphocholine
  • Phosphocholine
  • Glycerol vinyl ether
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Amine
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic salt
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.18ALOGPS
logP9.2ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-4.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area94.12 ŲChemAxon
Rotatable Bond Count40ChemAxon
Refractivity237.96 m³·mol⁻¹ChemAxon
Polarizability94.65 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-000i-9171321300-2a0f9342ac7e0564e0f1View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0079-3190110000-b062a7f5268bdcda0517View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0081-5090012000-35725ca5220670b12949View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-066r-0096002800-97080ed1e35fc2aef488View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-01p9-1093003200-3e20e566b373812eca5cView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0550-5095000000-ee7ecd8f2783e50a32c7View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-014i-0000000900-744784855ba282b3b501View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-00lr-0900000500-4114fb4df2817bba96d1View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-0689-0500210900-b45a7f0462e95dac7d73View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0udi-0000000090-707cc296d352c5f6c2ffView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-0udi-0000000090-707cc296d352c5f6c2ffView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-114j-0004921610-f5897a81002f30538f53View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-014i-0000000900-4debbea5304ca280bf65View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-014i-0031010900-548571864ad8c15298e4View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0a4i-5049200000-57446b0dbba74298aee4View in MoNA
Biological Properties
Cellular Locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Biospecimen Locations
  • All Tissues
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
All TissuesExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
 details
Abnormal Concentrations
Not Available
HMDB IDHMDB0011218
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB027973
KNApSAcK IDNot Available
Chemspider ID24767493
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53480683
PDB IDNot Available
ChEBI ID89977
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available