Showing metabocard for PC(P-18:0/22:5(4Z,7Z,10Z,13Z,16Z)) (BMDB0011260)

IdentificationTaxonomyPhysical propertiesPathwaysSpectraConcentrationsLinksReferencesXML
Record Information
Version1.0
Creation Date2016-10-03 18:15:27 UTC
Update Date2020-05-11 19:14:46 UTC
BMDB IDBMDB0011260
Secondary Accession Numbers
  • BMDB11260
Metabolite Identification
Common NamePC(P-18:0/22:5(4Z,7Z,10Z,13Z,16Z))
DescriptionPC(P-18:0/22:5(4Z,7Z,10Z,13Z,16Z)) is a phosphatidylchloline (PC). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylcholines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PC(P-18:0/22:5(4Z,7Z,10Z,13Z,16Z)), in particular, consists of one 1Z-octadecenyl chain to the C-1 atom, and one 4Z,7Z,10Z,13Z,16Z-docosapentaenoyl to the C-2 atom. In E. coli, PCs can be found in the integral component of the cell outer membrane. They are hydrolyzed by Phospholipases to a 2-acylglycerophosphocholine and a carboxylate.
Structure
Thumb
MOLSDFPDBSMILESInChI
Synonyms
ValueSource
1-(1-Enyl-stearoyl)-2-docosapentaenoyl-sn-glycero-3-phosphocholineHMDB
1-(1-Enyl-stearoyl)-2-osbondoyl-sn-glycero-3-phosphocholineHMDB
Gpcho(18:0/22:5)HMDB
Gpcho(18:0/22:5n6)HMDB
Gpcho(18:0/22:5W6)HMDB
Gpcho(40:5)HMDB
1-(1Z-Octadecenyl)-2-osbondoyl-GPCHMDB
1-(1Z-Octadecenyl)-2-osbondoyl-sn-glycero-3-phosphocholineHMDB
1-(1Z-Octadecenyl)-2-osbondoyl-sn-glycero-phosphatidylcholineHMDB
GPC(18:1/22:5)HMDB
GPC(40:6)HMDB
GPC(O-18:1(1Z)/22:5(4Z,7Z,10Z,13Z,16Z))HMDB
GPC(O-18:1(1Z)/22:5n6)HMDB
GPC(O-18:1(1Z)/22:5W6)HMDB
GPC(p-18:0/22:5(4Z,7Z,10Z,13Z,16Z))HMDB
GPC(p-18:0/22:5n6)HMDB
GPC(p-18:0/22:5W6)HMDB
GPCho(18:1/22:5)HMDB
GPCho(40:6)HMDB
GPCho(O-18:1(1Z)/22:5(4Z,7Z,10Z,13Z,16Z))HMDB
GPCho(O-18:1(1Z)/22:5n6)HMDB
GPCho(O-18:1(1Z)/22:5W6)HMDB
GPCho(p-18:0/22:5(4Z,7Z,10Z,13Z,16Z))HMDB
GPCho(p-18:0/22:5n6)HMDB
GPCho(p-18:0/22:5W6)HMDB
PC(18:1/22:5)HMDB
PC(40:6)HMDB
PC(O-18:1(1Z)/22:5(4Z,7Z,10Z,13Z,16Z))HMDB
PC(O-18:1(1Z)/22:5n6)HMDB
PC(O-18:1(1Z)/22:5W6)HMDB
PC(p-18:0/22:5n6)HMDB
PC(p-18:0/22:5W6)HMDB
Phosphatidylcholine(18:1/22:5)HMDB
Phosphatidylcholine(40:6)HMDB
Phosphatidylcholine(O-18:1(1Z)/22:5(4Z,7Z,10Z,13Z,16Z))HMDB
Phosphatidylcholine(O-18:1(1Z)/22:5n6)HMDB
Phosphatidylcholine(O-18:1(1Z)/22:5W6)HMDB
Phosphatidylcholine(p-18:0/22:5(4Z,7Z,10Z,13Z,16Z))HMDB
Phosphatidylcholine(p-18:0/22:5n6)HMDB
Phosphatidylcholine(p-18:0/22:5W6)HMDB
Chemical FormulaC48H86NO7P
Average Molecular Weight820.1727
Monoisotopic Molecular Weight819.614190623
IUPAC Name[2-({2-[(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoyloxy]-3-[(1Z)-octadec-1-en-1-yloxy]propyl phosphonato}oxy)ethyl]trimethylazanium
Traditional Name[2-({2-[(4Z,7Z,10Z,13Z,16Z)-docosa-4,7,10,13,16-pentaenoyloxy]-3-[(1Z)-octadec-1-en-1-yloxy]propyl phosphonato}oxy)ethyl]trimethylazanium
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCC\C=C/OCC(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CCCCC
InChI Identifier
InChI=1S/C48H86NO7P/c1-6-8-10-12-14-16-18-20-22-24-25-26-27-29-31-33-35-37-39-41-48(50)56-47(46-55-57(51,52)54-44-42-49(3,4)5)45-53-43-40-38-36-34-32-30-28-23-21-19-17-15-13-11-9-7-2/h14,16,20,22,25-26,29,31,35,37,40,43,47H,6-13,15,17-19,21,23-24,27-28,30,32-34,36,38-39,41-42,44-46H2,1-5H3/b16-14-,22-20-,26-25-,31-29-,37-35-,43-40-
InChI KeyDIXCRWPGXRCKNG-SOTCHDEZSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as 1-(1z-alkenyl),2-acyl-glycerophosphocholines. These are glycerophosphocholines that carry exactly one acyl chain attached to the glycerol moiety through an ester linkage at the O2-position, and one 1Z-alkenyl chain attached through an ether linkage at the O1-position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct Parent1-(1Z-alkenyl),2-acyl-glycerophosphocholines
Alternative Parents
Substituents
  • 1-(1z-alkenyl),2-acyl-glycerophosphocholine
  • Phosphocholine
  • Glycerol vinyl ether
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Amine
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic salt
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.71ALOGPS
logP10.25ChemAxon
logS-7.4ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-4.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area94.12 ŲChemAxon
Rotatable Bond Count42ChemAxon
Refractivity258.59 m³·mol⁻¹ChemAxon
Polarizability98.6 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-014i-0000000090-2cd3025cf49877e0af78View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-014i-0004002390-905f533d7d4535e9aca1View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-004i-4169200000-f72a2c7b2e79e89448a1View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-00di-0000000090-5335bab2e85ba5d5b2d9View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-0089-0900000050-5cf36deb78059628b0e6View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-023r-1900331690-fc98bdc068a6a6f8377bView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0udi-0000000090-1ef5199e0232e322e510View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-0udi-0000000090-1ef5199e0232e322e510View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0uml-0004920170-71fccda2ccb2a4293032View in MoNA
Biological Properties
Cellular Locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Biospecimen Locations
  • All Tissues
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
All TissuesExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
 details
Abnormal Concentrations
Not Available
HMDB IDHMDB0011260
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB028011
KNApSAcK IDNot Available
Chemspider ID24767535
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53480721
PDB IDNot Available
ChEBI IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available