Showing metabocard for PC(P-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z)) (BMDB0011288)

IdentificationTaxonomyPhysical propertiesPathwaysSpectraConcentrationsLinksReferencesXML
Record Information
Version1.0
Creation Date2016-10-03 18:15:56 UTC
Update Date2020-06-04 19:39:46 UTC
BMDB IDBMDB0011288
Secondary Accession Numbers
  • BMDB11288
Metabolite Identification
Common NamePC(P-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))
DescriptionPC(P-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z)) is a phosphatidylchloline (PC). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, phosphatidylcholines can have many different combinations of fatty acids of varying lengths and saturation attached to the C-1 and C-2 positions. PC(P-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z)), in particular, consists of one 1Z,11Z-octadecadienyl chain to the C-1 atom, and one 5Z,8Z,11Z,14Z,17Z-eicosapentaenoyl to the C-2 atom. In E. coli, PCs can be found in the integral component of the cell outer membrane. They are hydrolyzed by Phospholipases to a 2-acylglycerophosphocholine and a carboxylate.
Structure
Thumb
MOLSDFPDBSMILESInChI
Synonyms
ValueSource
1-(1-Enyl-vaccenoyl)-2-eicosapentaenoyl-sn-glycero-3-phosphocholineHMDB
Gpcho(18:1/20:5)HMDB
Gpcho(18:1n7/20:5n3)HMDB
Gpcho(18:1W7/20:5W3)HMDB
Gpcho(38:6)HMDB
1-(1Z,11Z-Octadecadienyl)-2-eicosapentaenoyl-GPCHMDB
1-(1Z,11Z-Octadecadienyl)-2-eicosapentaenoyl-sn-glycero-3-phosphocholineHMDB
1-(1Z,11Z-Octadecadienyl)-2-eicosapentaenoyl-sn-glycero-phosphatidylcholineHMDB
GPC(18:2/20:5)HMDB
GPC(38:7)HMDB
GPC(O-18:2(1Z,11Z)/20:5(5Z,8Z,11Z,14Z,17Z))HMDB
GPC(O-18:2(1Z,11Z)/20:5n3)HMDB
GPC(O-18:2(1Z,11Z)/20:5W3)HMDB
GPC(p-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))HMDB
GPC(p-18:1(11Z)/20:5n3)HMDB
GPC(p-18:1(11Z)/20:5W3)HMDB
GPCho(18:2/20:5)HMDB
GPCho(38:7)HMDB
GPCho(O-18:2(1Z,11Z)/20:5(5Z,8Z,11Z,14Z,17Z))HMDB
GPCho(O-18:2(1Z,11Z)/20:5n3)HMDB
GPCho(O-18:2(1Z,11Z)/20:5W3)HMDB
GPCho(p-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))HMDB
GPCho(p-18:1(11Z)/20:5n3)HMDB
GPCho(p-18:1(11Z)/20:5W3)HMDB
PC(18:2/20:5)HMDB
PC(38:7)HMDB
PC(O-18:2(1Z,11Z)/20:5(5Z,8Z,11Z,14Z,17Z))HMDB
PC(O-18:2(1Z,11Z)/20:5n3)HMDB
PC(O-18:2(1Z,11Z)/20:5W3)HMDB
PC(p-18:1(11Z)/20:5n3)HMDB
PC(p-18:1(11Z)/20:5W3)HMDB
Phosphatidylcholine(18:2/20:5)HMDB
Phosphatidylcholine(38:7)HMDB
Phosphatidylcholine(O-18:2(1Z,11Z)/20:5(5Z,8Z,11Z,14Z,17Z))HMDB
Phosphatidylcholine(O-18:2(1Z,11Z)/20:5n3)HMDB
Phosphatidylcholine(O-18:2(1Z,11Z)/20:5W3)HMDB
Phosphatidylcholine(p-18:1(11Z)/20:5(5Z,8Z,11Z,14Z,17Z))HMDB
Phosphatidylcholine(p-18:1(11Z)/20:5n3)HMDB
Phosphatidylcholine(p-18:1(11Z)/20:5W3)HMDB
Chemical FormulaC46H80NO7P
Average Molecular Weight790.1037
Monoisotopic Molecular Weight789.567240431
IUPAC Name(2-{[(2R)-2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]-3-[(1Z,11Z)-octadeca-1,11-dien-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium
Traditional Name(2-{[(2R)-2-[(5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoyloxy]-3-[(1Z,11Z)-octadeca-1,11-dien-1-yloxy]propyl phosphonato]oxy}ethyl)trimethylazanium
CAS Registry NumberNot Available
SMILES
CCCCCC\C=C/CCCCCCCC\C=C/OC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC
InChI Identifier
InChI=1S/C46H80NO7P/c1-6-8-10-12-14-16-18-20-22-24-25-27-29-31-33-35-37-39-46(48)54-45(44-53-55(49,50)52-42-40-47(3,4)5)43-51-41-38-36-34-32-30-28-26-23-21-19-17-15-13-11-9-7-2/h8,10,14,16-17,19-20,22,25,27,31,33,38,41,45H,6-7,9,11-13,15,18,21,23-24,26,28-30,32,34-37,39-40,42-44H2,1-5H3/b10-8-,16-14-,19-17-,22-20-,27-25-,33-31-,41-38-/t45-/m1/s1
InChI KeyFJKJTTCPLFXVEB-VRIHKRKTSA-N
Chemical Taxonomy
Description belongs to the class of organic compounds known as 1-(1z-alkenyl),2-acyl-glycerophosphocholines. These are glycerophosphocholines that carry exactly one acyl chain attached to the glycerol moiety through an ester linkage at the O2-position, and one 1Z-alkenyl chain attached through an ether linkage at the O1-position.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerophospholipids
Sub ClassGlycerophosphocholines
Direct Parent1-(1Z-alkenyl),2-acyl-glycerophosphocholines
Alternative Parents
Substituents
  • 1-(1z-alkenyl),2-acyl-glycerophosphocholine
  • Phosphocholine
  • Glycerol vinyl ether
  • Fatty acid ester
  • Dialkyl phosphate
  • Organic phosphoric acid derivative
  • Phosphoric acid ester
  • Alkyl phosphate
  • Fatty acyl
  • Quaternary ammonium salt
  • Tetraalkylammonium salt
  • Carboxylic acid ester
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Amine
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Organic nitrogen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic salt
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
StatusExpected but not Quantified
Origin
  • Endogenous
  • Exogenous
BiofunctionNot Available
ApplicationNot Available
Cellular locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Predicted Properties
PropertyValueSource
logP6.1ALOGPS
logP9ChemAxon
logS-7.3ALOGPS
pKa (Strongest Acidic)1.86ChemAxon
pKa (Strongest Basic)-4.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area94.12 ŲChemAxon
Rotatable Bond Count39ChemAxon
Refractivity250.51 m³·mol⁻¹ChemAxon
Polarizability93.68 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleYesChemAxon
Spectra
Spectra
Spectrum TypeDescriptionSplash Key
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-000i-9152212400-c6c177fbb4da578825edView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-052s-4293012100-fa637f9c4ef9e70e1d22View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-059i-9085022100-f5cc5cf6436f7976d3e2View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-0f79-0084000900-ade00f4f65f4bdf2fc69View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-0fri-1091101300-5e87a2058c3188aabafbView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0v0r-4093100000-025246d67196c07e3010View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Positivesplash10-0006-0000000900-87431d733caf5a379d94View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Positivesplash10-001l-0900000500-f6fc69d443b9d6a2fd2dView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Positivesplash10-001l-0500110900-a4ce7d0b7aff0df4a37aView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-00di-0000000090-ac68aab8a435edef1ed9View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-00di-0000000090-ac68aab8a435edef1ed9View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-00di-0004920710-f3ce038f99c73e2c6d0dView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 10V, Negativesplash10-000i-0000000900-ccee64249dd340e638d0View in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 20V, Negativesplash10-000i-0021010900-06d3b2e7a3cce49ce8cfView in MoNA
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 40V, Negativesplash10-0zi0-4294100000-4cd4390c19eafe49fa39View in MoNA
Biological Properties
Cellular Locations
  • Cell membrane
  • Intracellular membrane
  • Membrane
Biospecimen Locations
  • All Tissues
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
All TissuesExpected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal
  • Not Applicable
 details
Abnormal Concentrations
Not Available
HMDB IDHMDB0011288
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB028035
KNApSAcK IDNot Available
Chemspider ID24767563
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound53480767
PDB IDNot Available
ChEBI ID89926
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available