<?xml version="1.0" encoding="UTF-8"?>
<protein>
  <version>1.0</version>
  <creation_date>2018-05-07 22:29:35 UTC</creation_date>
  <update_date>2020-05-20 21:07:58 UTC</update_date>
  <accession>BMDBP02005</accession>
  <secondary_accessions>
  </secondary_accessions>
  <protein_type>Enzyme</protein_type>
  <synonyms>
  </synonyms>
  <gene_name>PUF60</gene_name>
  <general_function>Involved in DNA binding</general_function>
  <specific_function>DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcription factor. Acts as a transcriptional repressor through the core-TFIIH basal transcription factor. Represses FUBP1-induced transcriptional activation but not basal transcription. Decreases ERCC3 helicase activity. Is also involved in pre-mRNA splicing. Promotes splicing of an intron with weak 3'-splice site and pyrimidine tract in a cooperative manner with U2AF2. Involved in apoptosis induction when overexpressed in HeLa cells. Modulates alternative splicing of several mRNAs. Binds to relaxed DNA of active promoter regions. Binds to the pyrimidine tract and 3'-splice site regions of pre-mRNA; binding is enhanced in presence of U2AF2. Binds to Y5 RNA in association with TROVE2. Binds to poly(U) RNA (By similarity).</specific_function>
  <pathways>
  </pathways>
  <metabolite_associations>
    <metabolite>
      <accession>BMDB0003361</accession>
      <name>Pyrimidine</name>
    </metabolite>
  </metabolite_associations>
  <go_classifications>
  </go_classifications>
  <subcellular_locations>
  </subcellular_locations>
  <gene_properties>
    <chromosome_location>14</chromosome_location>
    <locus/>
    <gene_sequence>&gt;1593 bp
ATGGCGACGGCGACCATAGCGCTAGGGACAGACTCCATCAAGATGGAGAACGGGCAGGGC
ACAGCCGCGAAGCTGGGACTGCCTCCCTTGACGCCCGAGCAGCAGGAGGCCCTCCAGAAG
GCCAAGAAGTACGCCATGGAGCAGAGCATCAAGAGCGTGCTGGTGAAACAGACCATCGCC
CACCAGCAGCAGCAGCTTACCAACCTGCAGATGGCAGCAGTGACAATGGGCTTTGGAGAT
CCTCTCTCACCTTTGCAATCGATGGCGGCTCAGCGGCAGCGGGCACTGGCCATCATGTGC
CGGGTCTACGTGGGCTCCATCTACTACGAGCTAGGGGAGGACACCATCCGCCAGGCGTTC
GCCCCCTTTGGGCCTATCAAGAGCATCGACATGTCCTGGGACTCCGTCACCATGAAGCAC
AAGGGCTTTGCGTTTGTGGAGTATGAGGTCCCAGAAGCCGCCCAGCTGGCCTTGGAGCAG
ATGAATTCCGTGATGCTGGGAGGCAGGAACATCAAGGTGGGCAGACCCAGCAACATAGGG
CAGGCTCAGCCCATCATAGACCAGCTGGCCGAGGAGGCGCGAGCCTTCAACCGCATCTAC
GTGGCTTCCGTGCACCAGGACCTCTCGGATGATGACATCAAGAGTGTGTTTGAGGCCTTT
GGCAAGATCAAATCCTGCACGCTGGCTCGGGACCCCACGACTGGCAAACACAAGGGCTAT
GGCTTCATTGAATATGAGAAAGCCCAATCGTCCCAGGATGCTGTGTCTTCCATGAACCTT
TTTGACCTGGGGGGCCAGTACTTGCGGGTGGGCAAGGCTGTCACACCCCCTATGCCCCTG
CTTACACCGGCCACACCTGGAGGCCTCCCGCCGGCTGCTGCCGTGGCCGCAGCTGCAGCC
ACAGCCAAGATTACAGCTCAGGAAGCAGTGGCTGGAGCAGCAGTACTGGGTACCCTAGCC
ACTCCTGGACTGGTGTCCCCTGCACTGACTCTGGCCCAGCCCCTGGGGGCTCTACCCCAG
GCCGTCATGGCTGCCCAGGCCCCAGGAGTCATCACAGGTGTGACACCGGCTCGGCCTCCC
ATTCCGGTCACCATCCCCTCTGTTGGTGTGGTGAATCCCATCCTGGCCAGCCCTCCGACA
CTTGGTCTCCTGGAGCCTAAGAAGGAGAAGGAGGAGGAGGAGCTGTTTCCCGAGTCGGAG
CGGCCGGAGATGCTGAGTGAGCAGGAGCACATGAGCATCTCAGGAAGCAGCGCCCGCCAC
ATGGTGATGCAGAAGCTCCTCCGCAAGCAGGAGTCCACAGTGATGGTTCTGCGTAACATG
GTGGACCCCAAGGACATCGACGATGACCTTGAAGGGGAGGTGACTGAGGAGTGTGGCAAG
TTTGGTGCTGTCAACCGTGTCATCATCTACCAAGAGAAGCAGGGCGAGGAAGAGGACGCG
GAGATCATTGTCAAGATTTTTGTGGAGTTTTCCGTAGCCTCTGAGACTCACAAGGCCATC
CAGGACCTCAATGGGCGCTGGTTTGCTGGCCGCAAGGTGGTGGCTGAAGTGTATGACCAG
GAGCGTTTTGATAACAGTGACCTCTCTGCATGA</gene_sequence>
  </gene_properties>
  <protein_properties>
    <residue_number>530</residue_number>
    <molecular_weight>57087.0</molecular_weight>
    <theoretical_pi>4.87</theoretical_pi>
    <pfams>
    </pfams>
    <transmembrane_regions>
    </transmembrane_regions>
    <signal_regions>
      <region>None</region>
    </signal_regions>
    <polypeptide_sequence>&gt;Poly(U)-binding-splicing factor PUF60
MATATIALGTDSIKMENGQGTAAKLGLPPLTPEQQEALQKAKKYAMEQSIKSVLVKQTIA
HQQQQLTNLQMAAVTMGFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAF
APFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG
QAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGY
GFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATPGGLPPAAAVAAAAA
TAKITAQEAVAGAAVLGTLATPGLVSPALTLAQPLGALPQAVMAAQAPGVITGVTPARPP
IPVTIPSVGVVNPILASPPTLGLLEPKKEKEEEELFPESERPEMLSEQEHMSISGSSARH
MVMQKLLRKQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDA
EIIVKIFVEFSVASETHKAIQDLNGRWFAGRKVVAEVYDQERFDNSDLSA</polypeptide_sequence>
  </protein_properties>
  <genbank_protein_id>AAI05448.1</genbank_protein_id>
  <uniprot_id>Q2HJG2</uniprot_id>
  <uniprot_name>PUF60_BOVIN</uniprot_name>
  <pdb_ids>
  </pdb_ids>
  <genbank_gene_id>BC105447</genbank_gene_id>
  <genecard_id>PUF60</genecard_id>
  <geneatlas_id/>
  <general_references>
  </general_references>
  <metabolite_references>
  </metabolite_references>
</protein>
