Toggle navigation
BMDB
Browse
Metabolites
Biospecimens
Classes
Pathways
Proteins
Reactions
Search
ChemQuery Structure Search
Molecular Weight Search
Text Query
Sequence Search
Advanced Search
LC-MS Search
LC-MS/MS Search
GC-MS Search
NMR Search
Downloads
About
About the Bovine Metabolome Database
Citing the BMDB
Wishart Research Group
TMIC Wishart Node
Contact Us
metabolites
pathways
proteins
reactions
Search
Quantitative metabolomics services for biomarker discovery and validation.
Specializing in ready to use metabolomics kits.
Your source for quantitative metabolomics technologies and bioinformatics.
Showing structure for BMDB0012301 (UDP-D-apiose)
25202307 -OEChem-09042100303D 56 58 0 1 0 0 0 0 0999 V2000 2.6776 1.9808 -1.4079 P 0 0 1 0 0 0 0 0 0 0 0 0 0.5764 3.6854 -0.2519 P 0 0 2 0 0 0 0 0 0 0 0 0 -3.0619 1.4312 0.2883 O 0 0 0 0 0 0 0 0 0 0 0 0 4.2045 -0.2700 0.5952 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.0390 1.1457 3.1084 O 0 0 0 0 0 0 0 0 0 0 0 0 -3.3509 -1.4113 2.4553 O 0 0 0 0 0 0 0 0 0 0 0 0 2.4997 -1.9605 2.3144 O 0 0 0 0 0 0 0 0 0 0 0 0 2.8848 0.3828 -1.2586 O 0 0 0 0 0 0 0 0 0 0 0 0 1.0106 -1.7807 -0.0345 O 0 0 0 0 0 0 0 0 0 0 0 0 -0.9011 3.2181 0.2124 O 0 0 0 0 0 0 0 0 0 0 0 0 4.0006 -4.3088 2.0770 O 0 0 0 0 0 0 0 0 0 0 0 0 1.3030 2.2877 -0.6143 O 0 0 0 0 0 0 0 0 0 0 0 0 3.8107 2.6256 -0.4500 O 0 0 0 0 0 0 0 0 0 0 0 0 -4.5577 -2.3140 -0.5021 O 0 0 0 0 0 0 0 0 0 0 0 0 1.2976 4.1231 1.1284 O 0 0 0 0 0 0 0 0 0 0 0 0 2.6990 2.4882 -2.8207 O 0 0 0 0 0 0 0 0 0 0 0 0 0.6208 4.7139 -1.3440 O 0 0 0 0 0 0 0 0 0 0 0 0 -1.3837 -2.7549 -3.8150 O 0 0 0 0 0 0 0 0 0 0 0 0 -2.8636 -0.7100 -0.6285 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.9757 -2.5322 -2.1507 N 0 0 0 0 0 0 0 0 0 0 0 0 -2.7294 0.9361 2.5808 C 0 0 1 0 0 0 0 0 0 0 0 0 -2.6804 -0.3572 1.7953 C 0 0 2 0 0 0 0 0 0 0 0 0 -2.4884 1.9774 1.4964 C 0 0 1 0 0 0 0 0 0 0 0 0 -3.3541 0.0393 0.4929 C 0 0 1 0 0 0 0 0 0 0 0 0 3.1259 -2.3202 1.0825 C 0 0 1 0 0 0 0 0 0 0 0 0 2.4187 -1.6605 -0.0864 C 0 0 2 0 0 0 0 0 0 0 0 0 2.8838 -0.2161 0.0292 C 0 0 1 0 0 0 0 0 0 0 0 0 4.4743 -1.6206 1.0230 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.0120 2.2490 1.2399 C 0 0 0 0 0 0 0 0 0 0 0 0 3.2139 -3.8342 0.9967 C 0 0 0 0 0 0 0 0 0 0 0 0 -3.5413 -1.8790 -1.0476 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.7234 -0.2860 -1.3010 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.1962 -0.9193 -2.3510 C 0 0 0 0 0 0 0 0 0 0 0 0 -1.8431 -2.1487 -2.8518 C 0 0 0 0 0 0 0 0 0 0 0 0 -2.0209 0.9674 3.4135 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.6368 -0.6555 1.6380 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.0118 2.9196 1.6944 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.4432 -0.0716 0.5597 H 0 0 0 0 0 0 0 0 0 0 0 0 2.7557 -2.0843 -1.0415 H 0 0 0 0 0 0 0 0 0 0 0 0 2.2398 0.3534 0.7086 H 0 0 0 0 0 0 0 0 0 0 0 0 4.9881 -1.5760 1.9880 H 0 0 0 0 0 0 0 0 0 0 0 0 5.1425 -2.0687 0.2793 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.4716 1.3445 0.9506 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.5599 2.6415 2.1557 H 0 0 0 0 0 0 0 0 0 0 0 0 3.6743 -4.1593 0.0582 H 0 0 0 0 0 0 0 0 0 0 0 0 2.2209 -4.2873 1.0837 H 0 0 0 0 0 0 0 0 0 0 0 0 -4.0329 2.0018 3.5695 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.3487 -2.1781 1.8575 H 0 0 0 0 0 0 0 0 0 0 0 0 3.0113 -2.3634 3.0369 H 0 0 0 0 0 0 0 0 0 0 0 0 0.7945 -2.7281 -0.0604 H 0 0 0 0 0 0 0 0 0 0 0 0 -1.2348 0.6113 -0.9520 H 0 0 0 0 0 0 0 0 0 0 0 0 4.0376 -5.2775 2.0004 H 0 0 0 0 0 0 0 0 0 0 0 0 -3.4463 -3.3748 -2.4691 H 0 0 0 0 0 0 0 0 0 0 0 0 -0.3043 -0.5592 -2.8491 H 0 0 0 0 0 0 0 0 0 0 0 0 3.9571 3.5952 -0.4756 H 0 0 0 0 0 0 0 0 0 0 0 0 1.4160 3.4643 1.8449 H 0 0 0 0 0 0 0 0 0 0 0 0 1 8 1 0 0 0 0 1 12 1 0 0 0 0 1 13 1 0 0 0 0 1 16 2 0 0 0 0 2 10 1 0 0 0 0 2 12 1 0 0 0 0 2 15 1 0 0 0 0 2 17 2 0 0 0 0 3 23 1 0 0 0 0 3 24 1 0 0 0 0 4 27 1 0 0 0 0 4 28 1 0 0 0 0 5 21 1 0 0 0 0 5 47 1 0 0 0 0 6 22 1 0 0 0 0 6 48 1 0 0 0 0 7 25 1 0 0 0 0 7 49 1 0 0 0 0 8 27 1 0 0 0 0 9 26 1 0 0 0 0 9 50 1 0 0 0 0 10 29 1 0 0 0 0 11 30 1 0 0 0 0 11 52 1 0 0 0 0 13 55 1 0 0 0 0 14 31 2 0 0 0 0 15 56 1 0 0 0 0 18 34 2 0 0 0 0 19 24 1 0 0 0 0 19 31 1 0 0 0 0 19 32 1 0 0 0 0 20 31 1 0 0 0 0 20 34 1 0 0 0 0 20 53 1 0 0 0 0 21 22 1 0 0 0 0 21 23 1 0 0 0 0 21 35 1 0 0 0 0 22 24 1 0 0 0 0 22 36 1 0 0 0 0 23 29 1 0 0 0 0 23 37 1 0 0 0 0 24 38 1 0 0 0 0 25 26 1 0 0 0 0 25 28 1 0 0 0 0 25 30 1 0 0 0 0 26 27 1 0 0 0 0 26 39 1 0 0 0 0 27 40 1 0 0 0 0 28 41 1 0 0 0 0 28 42 1 0 0 0 0 29 43 1 0 0 0 0 29 44 1 0 0 0 0 30 45 1 0 0 0 0 30 46 1 0 0 0 0 32 33 2 0 0 0 0 32 51 1 0 0 0 0 33 34 1 0 0 0 0 33 54 1 0 0 0 0 M END > <PUBCHEM_COMPOUND_CID> 25202307 > <PUBCHEM_CONFORMER_RMSD> 1.4 > <PUBCHEM_CONFORMER_DIVERSEORDER> 2 44 88 84 22 77 85 70 39 72 63 74 9 61 38 66 71 80 23 24 57 20 10 6 47 87 34 73 45 65 50 46 8 12 78 19 83 26 43 28 35 13 64 25 32 42 36 37 1 14 49 82 40 67 54 33 58 75 68 5 56 51 11 31 7 81 41 30 53 17 29 18 21 62 69 16 86 27 15 48 76 52 79 55 4 60 3 59 > <PUBCHEM_MMFF94_PARTIAL_CHARGES> 44 1 1.51 10 -0.55 11 -0.68 12 -0.54 13 -0.77 14 -0.57 15 -0.77 16 -0.7 17 -0.7 18 -0.57 19 -0.47 2 1.51 20 -0.49 21 0.28 22 0.28 23 0.28 24 0.58 25 0.28 26 0.28 27 0.56 28 0.28 29 0.28 3 -0.56 30 0.28 31 0.69 32 -0.04 33 -0.14 34 0.62 4 -0.56 47 0.4 48 0.4 49 0.4 5 -0.68 50 0.4 51 0.15 52 0.4 53 0.37 54 0.15 55 0.5 56 0.5 6 -0.68 7 -0.68 8 -0.55 9 -0.68 > <PUBCHEM_EFFECTIVE_ROTOR_COUNT> 11 > <PUBCHEM_PHARMACOPHORE_FEATURES> 22 1 11 acceptor 1 11 donor 1 13 acceptor 1 14 acceptor 1 15 acceptor 1 16 acceptor 1 17 acceptor 1 18 acceptor 1 20 donor 1 3 acceptor 1 4 acceptor 1 5 acceptor 1 5 donor 1 6 acceptor 1 6 donor 1 7 acceptor 1 7 donor 1 9 acceptor 1 9 donor 5 3 21 22 23 24 rings 5 4 25 26 27 28 rings 6 19 20 31 32 33 34 rings > <PUBCHEM_HEAVY_ATOM_COUNT> 34 > <PUBCHEM_ATOM_DEF_STEREO_COUNT> 7 > <PUBCHEM_ATOM_UDEF_STEREO_COUNT> 0 > <PUBCHEM_BOND_DEF_STEREO_COUNT> 0 > <PUBCHEM_BOND_UDEF_STEREO_COUNT> 0 > <PUBCHEM_ISOTOPIC_ATOM_COUNT> 0 > <PUBCHEM_COMPONENT_COUNT> 1 > <PUBCHEM_CACTVS_TAUTO_COUNT> 3 > <PUBCHEM_CONFORMER_ID> 01808E8300000002 > <PUBCHEM_MMFF94_ENERGY> 51.0959 > <PUBCHEM_FEATURE_SELFOVERLAP> 111.725 > <PUBCHEM_SHAPE_FINGERPRINT> 10721379 63 16405301399439367191 11427363 43 17837728358529581791 12539773 59 17915485919814933425 12655387 17 17609247592643878761 12717326 25 16122145935460565310 12788726 201 17773318039983800359 13583140 156 18189918567868673433 13965767 371 17700145300167237691 15297060 5 16772140006055273299 15403338 16 18042424468764587473 19315092 285 17838025445739190031 19319366 153 18046939187640995356 20764821 26 17545601609585085002 23598288 3 18265626389548743317 238 59 17827066608912827037 238918 7 16901299374850527542 35225 105 16818238998234474592 463206 1 17338715298558674325 469060 322 17908940514616180016 484985 159 16159055419100291978 57527585 103 16824191217179484020 66674814 147 17545298127328344192 > <PUBCHEM_SHAPE_MULTIPOLES> 603.53 8.29 5.7 3.24 2.48 3.26 -0.89 -5.6 3.71 3.41 -0.97 -2.1 -1.66 -5.21 > <PUBCHEM_SHAPE_SELFOVERLAP> 1235.964 > <PUBCHEM_SHAPE_VOLUME> 350.5 > <PUBCHEM_COORDINATE_TYPE> 2 5 10 $$$$
Download:
MOL
SDF
3D-SDF
PDB
SMILES
InChI
×
Structure for BMDB0012301 (UDP-D-apiose)